I have python 2.6.6 installed in my oracle linux
I ran the command to install the package
pip install scipy
However I am getting the following error
[root@bigdatadev3 Downloads]# pip install scipy
DEPRECATION: Python 2.6 is no longer supported by the Python core team, please upgrade your Python. A future version of pip will drop support for Python 2.6
Collecting scipy
Using cached scipy-0.18.1.tar.gz
Building wheels for collected packages: scipy
Running setup.py bdist_wheel for scipy ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpDdmSFupip-wheel- --python-tag cp26:
usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: -c --help [cmd1 cmd2 ...]
or: -c --help-commands
or: -c cmd --help
error: invalid command 'bdist_wheel'
----------------------------------------
Failed building wheel for scipy
Running setup.py clean for scipy
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: scipy
Running setup.py install for scipy ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-RLPNZW-record/install-record.txt --single-version-externally-managed --compile:
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install scipy` (last SciPy release on PyPI)
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
lapack_mkl_info:
libraries mkl_rt not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries tatlas,tatlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries tatlas,tatlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries satlas,satlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries satlas,satlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries lapack_atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries lapack_atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1532: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
libraries lapack not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1543: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
warnings.warn(LapackNotFoundError.__doc__)
lapack_src_info:
NOT AVAILABLE
/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/system_info.py:1546: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
NOT AVAILABLE
Running from scipy source directory.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 415, in <module>
setup_package()
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 411, in setup_package
setup(**metadata)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-zu4ibh/scipy/setup.py", line 335, in configuration
config.add_subpackage('scipy')
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 1000, in add_subpackage
caller_level = 2)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 969, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 906, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 1000, in add_subpackage
caller_level = 2)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 969, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib64/python2.6/site-packages/numpy-1.11.3-py2.6-linux-x86_64.egg/numpy/distutils/misc_util.py", line 906, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/linalg/setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-zu4ibh/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-RLPNZW-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-zu4ibh/scipy/
What am I missing here?
Issue Resolved
I resolved the issue as follows
- ran
yum install lapackandyum install blas-devel lapack-devel - ran
pip install scipy
It took sometime to execute Running setup.py install for scipy ... but finally it's installed now
Issue Resolved
I resolved the issue as follows
yum install lapackandyum install blas-devel lapack-develpip install scipyIt took sometime to execute
Running setup.py install for scipy ...but finally it's installed now