I was checking how to use the MDHT libraries to validate C-CDA documents, reviewing the current implementations, to create a validation web service for my project. I firstly made a Eclipse local Java Project, added the JARs to the classpath, and implement the code. The execution was successful. But when I copy the same code to my web project (made with Spring Boot) and send a request that executes such code, the program fails.
To explain better, I made the following minimal method:
public void executeMDHTCode(byte[] fileContents) {
System.out.println(Arrays.toString(fileContents));
ValidationResult result = new ValidationResult();
ClinicalDocument doc = null;
try {
ConsolPackage.eINSTANCE.eClass();
doc = CDAUtil.load(new ByteArrayInputStream(fileContents), result);
} catch (ClassCastException|SAXParseException|Resource.IOWrappedException e) {
doc = null;
} catch (Exception e) {
throw new RuntimeException("Unknown error: " + e.getMessage(), e);
}
}
Then I used it in the following main method in my test project
public static void main(String[] args) throws IOException {
ByteArrayOutputStream outstr = new ByteArrayOutputStream();
int b = -1;
InputStream stream = AppTest.class.getResourceAsStream("xml_ccda_invalid.xml");
while((b = stream.read()) != -1) {
outstr.write(b);
}
executeMDHTCode(outstr.toByteArray()); // only added 'static'
}
And then used the same code in my server project (encapsulating it in a ccdaService)
@RequestMapping(/*POST endpoint properties*/)
public ResponseEntity<Object> validateCCDAFile(@RequestBody MultipartFile file) throws IOException {
ccdaService.executeMDHTCode(file.getBytes());
return null;
}
The document to be tested in both cases, xml_ccda_invalid.xml, contains the following:
<?xml version="1.0" encoding="UTF-8"?>
<ClinicalDocument xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="urn:hl7-org:v3" xsi:schemaLocation="urn:hl7-org:v3 CDA.xsd">
<realmCode code="US"/>
</ClinicalDocument>
As I said, the test project version terminates correctly. But the server version throws the following exception:
java.lang.UnsupportedOperationException: Unknown type ([vocab, ActClinicalDocument, DOCCLIN])
at org.eclipse.mdht.uml.cda.operations.ClinicalDocumentOperations.validateClassCode(ClinicalDocumentOperations.java:133) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.impl.ClinicalDocumentImpl.validateClassCode(ClinicalDocumentImpl.java:1659) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAValidator.validateClinicalDocument_validateClassCode(CDAValidator.java:1769) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAValidator.validateClinicalDocument(CDAValidator.java:1753) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAValidator.validate(CDAValidator.java:1075) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.emf.ecore.util.EObjectValidator.validate(EObjectValidator.java:324) ~[org.eclipse.emf.ecore-2.12.0.v20160420-0247.jar:?]
at org.eclipse.emf.ecore.util.Diagnostician.doValidate(Diagnostician.java:171) ~[org.eclipse.emf.ecore-2.12.0.v20160420-0247.jar:?]
at org.eclipse.emf.ecore.util.Diagnostician.validate(Diagnostician.java:158) ~[org.eclipse.emf.ecore-2.12.0.v20160420-0247.jar:?]
at org.eclipse.emf.ecore.util.Diagnostician.validate(Diagnostician.java:137) ~[org.eclipse.emf.ecore-2.12.0.v20160420-0247.jar:?]
at org.eclipse.emf.ecore.util.Diagnostician.validate(Diagnostician.java:108) ~[org.eclipse.emf.ecore-2.12.0.v20160420-0247.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAUtil.validate(CDAUtil.java:707) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAUtil.validate(CDAUtil.java:696) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAUtil.performEMFValidation(CDAUtil.java:830) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAUtil.load(CDAUtil.java:277) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at org.eclipse.mdht.uml.cda.util.CDAUtil.load(CDAUtil.java:252) ~[org.eclipse.mdht.uml.cda-3.0.0.201706220503.jar:?]
at companypackage.service.impl.CCDAServiceImpl.executeMDHTCode(CCDAServiceImpl.java:109) ~[bin/:?]
at companypackage.controller.CCDAController.validateCCDAFile(CCDAController.java:32) ~[bin/:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_102]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_102]
at (other spring and apache calls...)
I used the println statement to check the contents of the input array, and they are in both cases identical, so it's not a matter of server processing of the file.
I have not idea why this happens. I put all the jars of the server project into the test project's classpath and it still worked, so it's not a class name clash. It seems to be only interfere when actually used.
What could I be missing?
The looks to be an issue with the war file deployment - the ActClinicalDocument is defined in the org.eclipse.mdht.uml.hl7.vocab jar; if you are using maven for the build you can look at the following maven example https://github.com/mdht/mdht-models/tree/develop/examples/org.openhealthtools.mdht.cda.maven.example
if not make sure in your eclipse project that the jars etc are included in the binary build