I've decided to switch to constraints and face up with animation problems. In autoresizing mask world everything works fine. UIView is attached to right top. Content inside use autoresizing mask.

Animate code:
UIView.animate(withDuration: 0.3, delay: 0, options: [.curveEaseInOut]) {
self.constraints.first(where: {$0.firstAttribute == .height})?.constant = dstSize.height
self.constraints.first(where: {$0.firstAttribute == .width})?.constant = dstSize.width
self.setNeedsLayout()
self.layoutIfNeeded()
}

You need to move constraint's change outside the animation block
Update
In your Github attached code you need to re-layout the main view not the container