Edit phpstorm.sh and comment everything related with Jayatana.
if [ -n "$JAVA_TOOL_OPTIONS" -a "$JAVA_TOOL_OPTIONS" != "${JAVA_TOOL_OPTIONS%-javaagent*jayatanaag.jar*}" ] ; then
export _ORIGINAL_JAVA_TOOL_OPTIONS="$JAVA_TOOL_OPTIONS"
JAVA_TOOL_OPTIONS="${JAVA_TOOL_OPTIONS%-javaagent*jayatanaag.jar*}${JAVA_TOOL_OPTIONS#*jayatanaag.jar}"
fi
Edit phpstorm.sh and comment everything related with Jayatana.