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KeyError when using sc.pl.spatial in Scanpy: 'images' not found in spatial data

score 52 · Answer 1 · 2024-02-13T10:48:33.617000

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KeyError when using sc.pl.spatial in Scanpy: 'images' not found in spatial data

52 views Asked by ayesha iman At 13 February 2024 at 10:48

score 301 · Answer 2 · 2023-10-24T03:00:34.280000

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

301 views Asked by karlie022 At 24 October 2023 at 03:00

score 160 · Answer 3 · 2023-09-27T08:47:10.197000

Scanpy - single-cell RNA sequencing - pre-processing of individual Vs. integrated dataset

160 views Asked by Ofir Shorer At 27 September 2023 at 08:47

score 173 · Answer 4 · 2023-09-22T21:40:25.517000

Issue using infercnvpy.io.genomic_position_from_gtf

173 views Asked by Starts13 At 22 September 2023 at 21:40

score 480 · Answer 5 · 2023-09-22T19:03:28.670000

How to plot proportion of cells in each cluster with scanpy?

480 views Asked by pythonbeginner At 22 September 2023 at 19:03

score 440 · Answer 6 · 2023-09-19T11:08:19.913000

change color clusters umap python

440 views Asked by jonny jeep At 19 September 2023 at 11:08

score 90 · Answer 7 · 2023-07-19T16:12:55.910000

ValueError: setting an array element with a sequence- Anndata object

90 views Asked by n-ikiii16 At 19 July 2023 at 16:12

score 144 · Answer 8 · 2023-07-03T17:29:46.097000

Python 3.11 decorator to convert a function into a dataclass for scikit-learn BaseEstimator TransformerMixin including type annotations

144 views Asked by SumNeuron At 03 July 2023 at 17:29

score 566 · Answer 9 · 2023-06-20T12:39:07.167000

How to find which clusters a particular gene is expressed in using scanpy for scRNA-seq?

566 views Asked by Jeanie At 20 June 2023 at 12:39

score 129 · Answer 10 · 2023-06-17T09:17:43.447000

Jupyter Notebook scanpy import fails

129 views Asked by Jayadevan Gurubalan At 17 June 2023 at 09:17

score 51 · Answer 11 · 2023-05-16T09:52:07.467000

How to get user defined input for defining threshold in python script

51 views Asked by PesKchan At 16 May 2023 at 09:52

score 221 · Answer 12 · 2023-05-02T05:42:45.830000

ValueError with file extension

221 views Asked by CeDeR At 02 May 2023 at 05:42

score 281 · Answer 13 · 2023-04-28T19:06:02.407000

How to save plot to google drive?

281 views Asked by pythonbeginner At 28 April 2023 at 19:06

score 126 · Answer 14 · 2023-04-13T21:12:50.203000

How to split the single cell CITESeq data based on Hashtag antibody?

126 views Asked by Sumanta B At 13 April 2023 at 21:12

score 115 · Answer 15 · 2023-04-12T08:33:44.010000

how to plot scanpy tsne based on different conditions

115 views Asked by minoo At 12 April 2023 at 08:33

score 225 · Answer 16 · 2023-04-04T12:16:52.920000

grid arrange tsne plots from a for loop in scanpy using matplotlib

225 views Asked by minoo At 04 April 2023 at 12:16

score 416 · Answer 17 · 2023-04-03T12:57:53.937000

how can i add numeric scales to x and y axis of scanpy umap?

416 views Asked by minoo At 03 April 2023 at 12:57

score 89 · Answer 18 · 2023-03-14T18:32:51.503000

Please tell me how to fill an empty matrix with elements using for loop

89 views Asked by supigen At 14 March 2023 at 18:32

score 1764 · Answer 19 · 2023-03-03T12:02:41.800000

getting "ValueError: Axis limits cannot be NaN or Inf" error when plotting PCs

1.7k views Asked by John At 03 March 2023 at 12:02

score 72 · Answer 20 · 2023-02-23T08:17:13.307000

making cache using cache=True does not work in Scanpy

72 views Asked by Byung Chul Jung At 23 February 2023 at 08:17

TechQA.

List Question

KeyError when using sc.pl.spatial in Scanpy: 'images' not found in spatial data

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

Scanpy - single-cell RNA sequencing - pre-processing of individual Vs. integrated dataset

Issue using infercnvpy.io.genomic_position_from_gtf

How to plot proportion of cells in each cluster with scanpy?

change color clusters umap python

ValueError: setting an array element with a sequence- Anndata object

Python 3.11 decorator to convert a function into a dataclass for scikit-learn BaseEstimator TransformerMixin including type annotations

How to find which clusters a particular gene is expressed in using scanpy for scRNA-seq?

Jupyter Notebook scanpy import fails

How to get user defined input for defining threshold in python script

ValueError with file extension

How to save plot to google drive?

How to split the single cell CITESeq data based on Hashtag antibody?

how to plot scanpy tsne based on different conditions

grid arrange tsne plots from a for loop in scanpy using matplotlib

how can i add numeric scales to x and y axis of scanpy umap?

Please tell me how to fill an empty matrix with elements using for loop

getting "ValueError: Axis limits cannot be NaN or Inf" error when plotting PCs

making cache using cache=True does not work in Scanpy

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