If there is not any Java library that can encode djvu, what kind of potential difficulties may appear while trying to implement it?
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The DjVu file format is open, but a full reference encoder is not part of the standard:
This is due to patents:
There is an outdated GhostScript to DjVu converter, which may serve as a encoder reference.
References
What is DjVu
DjVu Licensing
Java DjVu to PDF eBook converter
JavaDjvu
DjVuDocEditor Class Reference
DidDjVu Project
DjVuLibre Project
Manual:How to use DjVu with MediaWiki