Their wiki only says the obvious (average complexity of the class), but what does it actually mean?
I know for method complexity, 15-20 is usually the upper bound for a testable and maintainable code.
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You can do a lot with Cyclomatic Complexity. Here are some posts on my blog but you could find much more: http://qualilogy.com/en/legacy-c-application-refactoring-reengineering-1/ and http://qualilogy.com/en/legacy-application-refactoring-reengineering-7/
Yes, per class/file it is an average of the complexity of each method/function: http://qualilogy.com/en/legacy-application-refactoring-sqale-plugin-1/