We have to visualize the DNA sequence Alignment slimier to blast visualizer like below >our project is a web based one having Java back-end with JSP,Struct
Currently needed way to visualize http://eagle.fish.washington.edu/Arabidopsis/20110721%20PGS2%20BLAST%20Alignment.png
HTML tables cannot use to visualize the dynamic content .Alignment information is already generated and We need to know a method to visualize in slimier manner in image even using jQuery or flash plugin .