i was using sourcetree (since it is not launching on windows AGAIN I am skiping it forever :) ) and there were no problems to provide different .ppk keys by adding them to Pageant. I am missing same functionality in GitHub desktop. It only works when i have one key in .ssh folder called id_rsa. Is there any way to specify different ssh's because i have different github accounts for different projects.
Use different SSH keys with GitHub Desktop
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Not sure if GitHub Desktop has UI for this but to specify default ssh key you need to add
in In your ~/.ssh/config file.