USB0 changed the mode due to EMI using AM1808

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I am using AM1808 for my application and using Ubuntu 12.04 for development purpose.

I have cross compiled my kernel for USB0 on Host mode.

Due to the issue of EMI my USB0 mode has been changed from Host to Peripheral.

I need to make USB0 remain in the HOST even after EMI generation.

Is there any way to handle this from software side ?

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