Uploading Spatial 10x data into seurat

203 views Asked by At

I am trying to upload my 10X Visium data into R so that I can create a Seurat object but for some reason by data has not been able to be uploaded. I am using the code from the Satija lab to load the data

Load10X_Spatial(
  data.dir,
  filename = "filtered_feature_bc_matrix.h5",   #here I have the h5 file for the filtered but I was wondering how would I also get the images to be uploaded as well because the output from the spaceranger has a folder called "Spatial" but I was not sure. 
  assay = "Spatial",
  slice = "slice1",
  filter.matrix = TRUE, 
  to.upper = FALSE,
  image = NULL,
  ...
)
0

There are 0 answers