I have a dataframe with missing data which I am imputing with mice.
I do not fully understand the output I am getting. SSQ = Sum of Squares. But which sum of squares? Residual sum of squares? Or Total sum of squares - residual sum of squares? I am assuming the latter, but am not sure.
df1 makes sense - it's the number of groups within each variable -1. df2 I don't understand. I have 473 variables, and 20 imputations in mice. But even 473 x 20 does not equal the 5 million in the first column below!!
Also, does the eta2 refer to a result of a one-way anova, and the partial-eta2 refer to the result of my multiway anova?
What is the bottom residual?
Thank you so much for any and all advice!!
imput <- mice(bdd, seed=1, pred = pred1, meth = meth1, m=20, print = FALSE)
> MAnoAP<-mi.anova(mi.res=imput,formula="AP~sexe+stage+connaissances.adaptees+temps.entourage+reconnaissance.entourage+reconnaissance.superieurs")
Univariate ANOVA for Multiply Imputed Data (Type 2)
lm Formula: AP~sexe+stage+connaissances.adaptees+temps.entourage+reconnaissance.entourage+reconnaissance.superieurs
R^2=0.092
..........................................................................
ANOVA Table
SSQ df1 df2 F value Pr(>F) eta2 partial.eta2
gender 265.56286 1 5426186.13 6.7227 0.00952 0.01333 0.01447
stage 736.12077 7 276366.62 2.6410 0.00996 0.03695 0.03910
connaissances.adaptees 425.68167 1 21534.43 10.4479 0.00123 0.02136 0.02299
temps.entourage 269.14396 2 524732.88 3.3883 0.03377 0.01351 0.01466
reconnaissance.entourage 109.61170 1 1148306.99 2.7651 0.09634 0.00550 0.00602
reconnaissance.superieurs 26.02588 1 7299027.16 0.6574 0.41748 0.00131 0.00144
Residual 18092.04873 NA NA NA NA NA NA
I figured out part of the answer
SSQ = the part of sum of squares that is attributable to that particular factor
Residual = the SSQ residual
still don't understand df2