I am trying multiple files that look like this:
k27.contigs.fa; where the value (e.g. 27) differs
I am trying to write a for loop for a function for each of my file, and the functions looks like:
megahit_toolkit contig2fastg 99 k99.contigs.fa > k99.fastg
for x in *.contigs.fa
do
megahit_toolkit contig2fastg ${x%.contings.fa*} $x > ${x%.contings.fa*}.fastg
done
How do I modify the code so that I can replace the number and ignore the k before that?