Is it possible to run Sonar analysis and ignore that violations were set as false positive. For example when somebody else would like to check whether these violations has been marked as false positive properly.
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No, it is not possible unless you run the analysis of your application with another project key. But the right way to review false positives is to use the Issues page: http://docs.codehaus.org/display/SONAR/Seeing+Issues#SeeingIssues-IssuesServiceandFilters