I have 2 dataframes with different number of rows and columns, and I'd like to show both of them in a circos plot with circlize
.
My data looks like this:
df1=data.frame(replicate(7,sample(-200:200,200,rep=TRUE))/100)
df2=data.frame(replicate(2,sample(-200:200,200,rep=TRUE))/100)
#head(df1)
X1 X2 X3 X4 X5 X6 X7
1 -0.03 0.63 -0.33 0.73 -1.37 -1.39 1.96
2 -1.81 -1.24 -1.63 1.58 0.13 1.39 -0.76
3 0.02 -2.00 -1.93 -1.35 1.06 -0.58 -0.77
4 -1.11 -1.38 -0.66 -0.40 1.69 -0.47 -1.55
5 0.98 0.06 0.00 -0.35 1.97 1.74 0.72
6 1.51 -1.68 -0.44 -1.74 0.15 0.26 0.36
#head(df2)
X1 X2
1 0.16 -0.81
2 -1.38 -0.16
3 -0.22 -0.74
4 0.73 -0.82
5 0.58 -1.87
6 -0.63 1.50
I want to build a single circos plot where the top is showing df1
and bottom is showing df2
, but I can only show individual dfs. For instance, this is how I show df1
:
col_fun1=colorRamp2(c(min(df1), 0, max(df1)), c("blue", "white", "red"))
circos.heatmap(df1, col = col_fun1, cluster = T, track.height = 0.2, rownames.side = "outside", rownames.cex = 0.6)
circos.clear()
How can I df1 only in the top half, and df2 only in the bottom half?