I'm using a program called SPAdes-3.50-Darwin and while running it on a server (one which I do not have root access to), I get the following error even though on my local computer it runs fine:
== Running read error correction tool: /export/home/james/Tools/SPAdes-3.5.0-Darwin/bin/hammer /export/home/james/package/output/pg/assembly_files/NA12877_S1_chr14_105900000-107300000/spades_files/3-49/corrected/configs/config.info
[Errno 13] Permission denied
Traceback (most recent call last):
File "/export/home/james/Tools/SPAdes-3.5.0-Darwin/bin/spades.py", line 586, in main
ext_python_modules_home, log)
File "/export/home/james/Tools/SPAdes-3.5.0-Darwin/share/spades/spades_pipeline/hammer_logic.py", line 128, in run_hammer
support.sys_call(command, log)
File "/export/home/james/Tools/SPAdes-3.5.0-Darwin/share/spades/spades_pipeline/support.py", line 181, in sys_call
proc = subprocess.Popen(cmd_list, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, cwd=cwd)
File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
errread, errwrite)
File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
raise child_exception
OSError: [Errno 13] Permission denied
Does this have to do with not having root permission?