Usually when I build a new website I create a .NET or PHP website. These website either connect to a MySQL DB or an external API. To do this I can securely store my credentials to these services and the back end will authenticate to them. Now since I want to build a Progressive Web App which is front-end only, how can I securely auth to these? Does my PWA have to have a login page that returns an API key that is dynamic? Thanks
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Progressive Web App (PWA) is not front-end only. You can see the definition and the PWA Baseline too clearly understand what makes a PWA.
The problem you have mention is authentication on Single Page Web apps (which is front-end only). Here is the first article from Google with keyword "Single page web app authentication".
Token Based Authentication for Single Page Apps