Let's assume you have a mobile web app under the domain mobile.example.com and a desktop web-app under the domain example.com.
Web Browser–to–Native App Handoff is working and catches all the routes under those domains.
If you manually visit mobile.example.com, all subsequent links under that domain remain within Mobile Safari, as they should. You then encounter a link to example.com which would under normal circumstances, render responsively in Mobile Safari. With Handoff enabled, it opens with the Native app.
Is there a way to work around this behavior and keep it within Mobile Safari?