I create some patchs that have to be applied on source code obtained using git, which are applied by the build tool (BitBake). It works well, but I don't know what it will do if the code is completely modified (say that the lines which are modified are removed, for example).
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git apply <patch>either apply the patch completely or does not apply at all. So, if git fails to cleanly apply the patch, it will abort the patch.