Can someone provide an example where an affine gap penalty would eventually give a different result than running NW on two sequences with a fixed gap penalty ?
Can someone provide an example where an affine gap penalty would eventually give a different result than running NW on two sequences with a fixed gap penalty ?
Affine Gap Penalty Model:
Notice: To get an optimal global alignment, you need to change "End Gap Penalty" to true in "STEP 2 - Set your pairwise alignment options"
Fixed Gap Penalty Model: