Java Google Analytics API - Read timed out

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I'm running a load of queries from Google Analytics which works fine on my local machine. However on the server it seems to have run 3 queries (of 251) before this error:

java.net.SocketTimeoutException: Read timed out
    at java.net.SocketInputStream.socketRead0(Native Method)
    at java.net.SocketInputStream.read(SocketInputStream.java:146)
    at sun.security.ssl.InputRecord.readFully(InputRecord.java:312)
    at sun.security.ssl.InputRecord.read(InputRecord.java:350)
    at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:818)
    at sun.security.ssl.SSLSocketImpl.readDataRecord(SSLSocketImpl.java:775)
    at sun.security.ssl.AppInputStream.read(AppInputStream.java:94)
    at java.io.BufferedInputStream.fill(BufferedInputStream.java:235)
    at java.io.BufferedInputStream.read1(BufferedInputStream.java:275)
at java.io.BufferedInputStream.read(BufferedInputStream.java:334)
at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:688)
at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:633)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1162)
at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:397)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:338)
at com.google.api.client.http.javanet.NetHttpResponse.<init>(NetHttpResponse.java:37)
at com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:94)
at com.google.api.client.http.HttpRequest.execute(HttpRequest.java:972)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352)
at com.google.api.client.googleapis.services.AbstractGoogleClientRequest.execute(AbstractGoogleClientRequest.java:469)
at co.beek.pano.model.beans.APImethods.makeRequest(Unknown Source)
at co.beek.pano.service.dataService.googleAnalytics.GAServiceImpl.loadLandingPageData(Unknown Source)
at co.beek.pano.service.dataService.googleAnalytics.GAServiceImpl.cacheGAData(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy51.cacheGAData(Unknown Source)
at co.beek.jobs.CacheReportsJob.cacheGuideStats(Unknown Source)
at co.beek.jobs.CacheReportsJob.cacheGuideStats(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.scheduling.support.ScheduledMethodRunnable.run(ScheduledMethodRunnable.java:64)
at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.java:53)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRunAndReset(FutureTask.java:351)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:178)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:165)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:267)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:636)

I read somewhere that you can increase the time out limit, but not sure where you can do that, is it in the initialisation?

    HttpTransport httpTransport = GoogleNetHttpTransport.newTrustedTransport();
    GoogleCredential credential = new GoogleCredential.Builder()
        .setTransport(httpTransport)
        .setJsonFactory(JSON_FACTORY)
        .setServiceAccountId(SERVICE_ACCOUNT_EMAIL)
        .setServiceAccountPrivateKeyFromP12File(new File(KEY_FILE_LOCATION))
        .setServiceAccountScopes(AnalyticsScopes.all())
        .build();

    // Construct the Analytics service object.
    return new Analytics.Builder(httpTransport, JSON_FACTORY, credential)
        .setApplicationName(APPLICATION_NAME).build();
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https://developers.google.com/api-client-library/java/google-api-java-client/errors

 private static HttpRequestInitializer setHttpTimeout(final HttpRequestInitializer requestInitializer) {
      return new HttpRequestInitializer() {
        @Override
        public void initialize(HttpRequest httpRequest) throws IOException {
          requestInitializer.initialize(httpRequest);
          httpRequest.setConnectTimeout(3 * 60000);  // 3 minutes connect timeout
          httpRequest.setReadTimeout(3 * 60000);  // 3 minutes read timeout
        }};

 }

public static Analytics initializeAnalytics() throws Exception {
    // Initializes an authorized analytics service object.

    // Construct a GoogleCredential object with the service account email
    // and p12 file downloaded from the developer console.
    HttpTransport httpTransport = GoogleNetHttpTransport.newTrustedTransport();
    GoogleCredential credential = new GoogleCredential.Builder()
        .setTransport(httpTransport)
        .setJsonFactory(JSON_FACTORY)
        .setServiceAccountId(SERVICE_ACCOUNT_EMAIL)
        .setServiceAccountPrivateKeyFromP12File(new File(KEY_FILE_LOCATION))
        .setServiceAccountScopes(AnalyticsScopes.all())
        .build();

    // Construct the Analytics service object.
    return new Analytics.Builder(httpTransport, JSON_FACTORY,setHttpTimeout(credential))
        .setApplicationName(APPLICATION_NAME).build();
  }