I tried installing scikit-bio by running conda install -c https://conda.anaconda.org/biocore scikit-bio
per the documentation, but verifying the installation via python -m skbio.test
yielded the following error: Error while finding module specification for 'skbio.test' (ModuleNotFoundError: No module named 'skbio')
.
Next, I tried installing with pip install numpy
and pip install scikit-bio
, but that yielded a huge wall of errors. Tried the installation test anyway, got the same ModuleNotFoundError.
I'm on a MacBook Air 2020 with a M1 processor, so not sure if that's causing the issue.
I don't know if you still have problems with scikit-bio but the solution that worked for me was using sse2neon package: https://github.com/DLTcollab/sse2neon
Following instructions should work
Open the simde-sse2.h file and replace each of the following two lines:
with:
then run:
!Note that this solution doesn't work for newer python releases. I used python 3.8 for this solution.