We have 3D models from Autodesk Inventor that we can currently turn into 3D anaglyph models using an add-on program. This only works for still images though.
There is potential to do an animation and turn that video into an anaglyph but I dont have high hopes for it to be good quality and likely not popping out of the screen.
Is there another program available that can make an interactive 3D model that is a pop-out of the screen anaglyph?