I have a list of about ~96,000 species names I need to collect all synonyms for. I have tried the 'taxize' package with the synonyms() function, which outputs the information I need but my list is too long for it to work properly. I have looked into the 'taxizedb' package which has been suggested as faster for some users before, but I am not sure which functions within this package will accomplish what I am trying to do.
Any suggestions would be greatly appreciated! Thanks!
Code so far:
library("taxize")
library("tidyverse")
#load in list of species (~96,000)
#vspli <- read.csv(file="AllBHLspecieslist.csv", header=TRUE) #my code
vspli <- c("Acer obtusatum", "Acer interius", "Acer opalus", "Acer saccharum", "Acer palmatum") #workable example
#Use Taxize to search for synonyms
synlist1 <- synonyms(c(vspli), db="itis", rows=1) #currently this line of code crashes before completion when using the list of 96k species
In case anyone comes across this later, I found the package 'taxadb' which allowed for the completion of this problem much faster. Here is the code in case it proves useful: