Identify cluster number in dendrogram from heatmaply

236 views Asked by At

I am using the heatmaply package to create heatmaps with dendrograms from the dendextend package. Is there a way to identify the cluster numbers on the dendrogram? This is an example heatmap for the mtcars dataset. I want cluster numbers on the dendrogram (or a legend) like the ones I manually put in red. This is the code for replication:

library(dendextend, datasets, heatmaply)

row_dend <- mtcars %>% dist %>% hclust %>% as.dendrogram %>%
  set("branches_k_color", value = c(1:8), k = 8) %>% 
  set("branches_lwd", 1)

col_dend <- mtcars%>% t %>% dist %>% hclust %>% as.dendrogram %>%
  set("branches_k_color", value = c(1:8), k = 8) %>% 
  set("branches_lwd", 1)

heatmaply_mtcars <- 
heatmaply(mtcars, hclustfun = hclust, hclust_method = "ward.D2",
                Rowv = row_dend,
                Colv = col_dend,
                xlab = "x axis",
                ylab = "y axis",
                showticklabels = c(TRUE, TRUE),
                scale_fill_gradient_fun = ggplot2::scale_fill_gradient2(high = "#025492"),
                file = "inter_heatmap.html",
                column_text_angle = 30,
                colorbar_thickness = 50)

Example heatmap with mtcars dataset

0

There are 0 answers