How to use bibliography in different directory when knitting rmarkdown document to beamer presentation?

1.5k views Asked by At

I'm knitting some beamer slides in an RMarkdown script in Rstudio on a Windows 7 PC. The slides are in the directory

C:/me/slides/myslides.Rmd

I have a master bibliography that lives in

C:/me/bib/masterbib.bib

I cannot figure out how to link to the bibliography file from the RMarkdown document. Here's the YAML from my attempt:

---
title: "Slides"
author: "me"
date: "2016-12-20"
bibliography: C:/me/bib/masterbib.bib
biblio-style: "apalike"
output: 
  beamer_presentation:
    citation_package: natbib
---

Here's the error:

! Undefined control sequence.
<write> \string \bibdata {C:\me\bib\masterbib}
l.174 \end{frame}

Error: Failed to compile Slides.tex. See Slides.log for more info.
In addition: Warning message:
running command '"pdflatex" -halt-on-error -interaction=batchmode "Slides.tex"' had status 1 
Execution halted

I've tried a couple other ways to specify the directory for masterbib.bib, but none have worked. I would prefer to keep the masterbib.bib file where it is, and not make an extra copy in the C:/me/slides/ directory. Thanks for your help!


Edit

When attempting to pass the following into YAML (quoteed with forward slashes):

bibliography: "C:/LaTeXstuff/BibTexLibrary/BrianBib.bib"

I get a fatal error with log output:

! Undefined control sequence.
<write> \string \bibdata {C:\me
                                        \bib\masterbib}
l.174 \end{frame}

Here is how much of TeX's memory you used:
 18047 strings out of 494045
 334241 string characters out of 3145937
 424206 words of memory out of 3000000
 20891 multiletter control sequences out of 15000+200000
 31808 words of font info for 44 fonts, out of 3000000 for 9000
 715 hyphenation exceptions out of 8191
 56i,11n,55p,434b,376s stack positions out of 5000i,500n,10000p,200000b,50000s

!  ==> Fatal error occurred, no output PDF file produced!

When passing the following into YAML (quoted with backslashes)

bibliography: "C:\me\bib\masterbib.bib"

I get the following error in the Rstudio console

Error in yaml::yaml.load(enc2utf8(string), ...) : 
  Scanner error: while parsing a quoted scalar at line 4, column 15found unknown escape character at line 4, column 29
Calls: <Anonymous> ... yaml_load_utf8 -> mark_utf8 -> <Anonymous> -> .Call
Execution halted

When passing the following into YAML (unquoted with backslashes)

bibliography: C:\me\bib\masterbib.bib

I get the following error in the Rstudio console

! Undefined control sequence.
<write> \string \bibdata {C:\me
                                        \bib\masterbib}
l.174 \end{frame}

Error: Failed to compile BibTest.tex. See BibTest.log for more info.
In addition: Warning message:
running command '"pdflatex" -halt-on-error -interaction=batchmode "BibTest.tex"' had status 1 
Execution halted
1

There are 1 answers

0
pirate LG On

Try unquoted with two backslashes:

...    
bibliography: C:\\me\\bib\\masterbib.bib
...