How to save upsetr graph as an image file from within function?

1k views Asked by At

UpSetR graphs are not saving properly when I call f. What is being saved to tmp.tiff is a blank image file. If I debug into the function, then it saves properly.

f <- function(tmp){
  tmp <- tmp %>% 
    fromList() %>% 
    upset()
  tiff(filename = 'tmp.tiff')
  tmp
  dev.off()
}

list(a = c(1, 1, 2, 6), b = c(2, 2, 3, 7)) %>%
  f()

I've saved the graph to a variable, called the tiff function for a file stream, called the graph variable and then dev.off(). What am I missing here?

edit:

#Calling tiff before upset does not work either.
f <- function(tmp){
  tiff(filename = 'tmp.tiff')
  upset(fromList(tmp))
  dev.off()
}

list(a = c(1, 1, 2, 6), b = c(2, 2, 3, 7)) %>%
  f()
1

There are 1 answers

0
Joaquin On

if this is still a problem, I think you can find a solution here:

https://github.com/hms-dbmi/UpSetR/issues/115#issuecomment-1416486255

It seems that you need to print the plot to be able to save it inside a function. I don't know why, just came across it after reading this question.