I would like to retrieve IDs from several databases using InChI
as an input, e.g.
InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1
One can use unichem from bioservices
for this, however, these functions all require the InChIKey
as input, e.g.
KDXKERNSBIXSRK-YFKPBYRVSA-N
Is it possible to interconvert the two using bioservices
and if not is it possible to somehow use the functions in unichem
with InChI
rather than the InChIKey
?
I tried:
from bioservices import *
u = UniChem()
u.get_src_compound_ids_from_inchikey('KDXKERNSBIXSRK-YFKPBYRVSA-N')
which works fine, however,
u.get_src_compound_ids_from_inchikey('InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1')
does not work and returns 400
.
Not sure if directly possible in
bioservices
but one can do the following workaround using chemspider:This will give the desired InChIKey
which can be used in
unichem
.