How to implement dfu-programmer for Atmel in Android

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I am developing a native Android app which talks to a cortex (microcontroller) which has Atmel micro-controller inside. I found command-line programmer for Atmel (https://dfu-programmer.github.io/) for Linux and Windows but I do not know how to implement this in my android application. I am new to such concept (DFU integration), so not even sure how to start it.

Can anyone please help? I would really appreciate any help.

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