It seems that I get an error when format=table but no error with format=fixed. Here is the command. What's weird is that it still seems to load the data. I just have to figure out a way to move past this. And it would give me peace of mind to not have any error. The dataframe is preprocessed, types set within the columns.
The command I run is:
hdf = pd.HDFStore('path-to-file')
hdf.put('df',df,format='table')
The error I get is:
HDF5ExtError: HDF5 error back trace
File "../../../src/H5Dio.c", line 182, in H5Dread
can't read data
File "../../../src/H5Dio.c", line 550, in H5D__read
can't read data
File "../../../src/H5Dchunk.c", line 1837, in H5D__chunk_read
unable to read raw data chunk
File "../../../src/H5Dchunk.c", line 2863, in H5D__chunk_lock
unable to read raw data chunk
File "../../../src/H5Fio.c", line 113, in H5F_block_read
read through metadata accumulator failed
File "../../../src/H5Faccum.c", line 258, in H5F_accum_read
driver read request failed
File "../../../src/H5FDint.c", line 142, in H5FD_read
driver read request failed
File "../../../src/H5FDsec2.c", line 725, in H5FD_sec2_read
file read failed: time = Mon Nov 17 01:25:35 2014