Is there a way to configure HAProxy to stop sending queries to one of the nodes in a percona xtradb cluster if that node is running a very slow query i.e, bypassing the node processing the extremely slow query and send only to the other nodes until the node processing the extremely slow query becomes free?
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You would have to modify the HAProxy monitoring script to consider long running queries in it's decision making process. This is not something that can be done via any built-in means; it would be completely custom written.