If I have fit a model mf with depmix() and fit() using depmixS4 package, and I want to know the log-likelihood of generating a given sequence s, how should I do?
I know in the HiddenMarkov package I can use forwardback(s, mf$Pi, mf$...)$LL to get the log-likelihood, but I find the forwardbackward() function in depmixS4 does not work similarly.
Finally I found the way myself, as first time working with S4...
Firstly initialize a model (depmix obj) with
depmix(), and then update it with parameters in the fittedmfusingsetpars(). After that theforwardbackward()will workAnyone knows better solution plz tell me...