I followed the directions to install etetoolkit for mac.
# Install Minconda (you can ignore this step if you already have Anaconda/Miniconda)
curl -L 'http://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh' -o Miniconda3-latest-MacOSX-x86_64.sh
bash Miniconda3-latest-MacOSX-x86_64.sh -b -p ~/anaconda_ete/
export PATH=~/anaconda_ete/bin:$PATH;
# Install ETE and external tools
conda install -c etetoolkit ete3 ete_toolchain
# Check installation
ete3 build check
I get an error when I run conda install -c etetoolkit ete3 ete_toolchain
Error:
UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment:
- ete3 -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0']
- ete_toolchain -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'
conda install python=2.7
conda install -c etetoolkit ete3 ete_toolchain
Then I verified this worked by running
ete3 build check
. In the resultsclustalo: MISSING
displayed, but that's a new problem to solve.UPDATE
The final problem was solved by running
conda install -c etetoolkit ete3_external_apps
There is a type-o in the instructions given by ete3. Use this instead.