I have two MDS plot for the same 356 items, what is the best thing that I can do to compare these two plots?
I tried to use Procrustes in R but I did not like the result that I get is there another functions I can use in R to compare them?
dat1 <- read.csv("file1.r",sep=" ", header=FALSE)
distdat1 <- dist(dat1)
isores1 <- isoMDS(distdat1)
dat2 <- read.csv("file2.r",sep=" ", header=FALSE)
distdat2 <- dist(dat2)
isores2 <- isoMDS(distdat2)
pro <- procrustes(isores2,isores1)
plot(pro,kind=2)
text(pro,cex=0.2)