Automating autoruns-psexec or not

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So i'm working on some project to find malware in my network.Trying to automate autoruns(sysinternals) in order to find anomalies or changes in startup on workstations.to do so i want to make daily reports for multiple workstations each day and check for changes for previous reports(finding differences). So i need couple of advices: 1.Should i remote execute the script with psexec(sysinternals)? it seems way to risky with high priviliged account .. is there any other way? 2.Any working software for finding diffrence in report(xml, csv, or just text)(easy to use-free and windows) I have already tried to make it using c but it is too much effort.should i write it in python or other language like c#...

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user4317867 On

I would use silentrunners.org to create daily snapshots. Then you could compare those and should something change flag that system for further review. Windows has FC which Compares two files or sets of files and displays the differences between them

FC [/A] [/C] [/L] [/LBn] [/N] [/OFF[LINE]] [/T] [/U] [/W] [/nnnn]
[drive1:][path1]filename1 [drive2:][path2]filename2
FC /B [drive1:][path1]filename1 [drive2:][path2]filename2