TechQA.

Question

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

score 48 · Answer 1 · 2024-03-08T14:46:45.760000

0

Answer

48

Views

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

48 views Asked by user23561149 At 08 March 2024 at 14:46

score 17 · Answer 2 · 2024-03-07T11:51:10.610000

Filtering VCF files with bcftools

17 views Asked by eleni.ps At 07 March 2024 at 11:51

score 22 · Answer 3 · 2024-03-07T04:29:10.233000

Separating alleles for 'bcftools merge' when ploidy >2

22 views Asked by Isaac At 07 March 2024 at 04:29

score 14 · Answer 4 · 2024-02-25T03:33:17.053000

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

14 views Asked by CoderQ At 25 February 2024 at 03:33

score 172 · Answer 5 · 2023-10-03T19:18:31.933000

Extract summary statistic (beta, SE, EA, non-EA, EA frequency) from csv files (extracted from vcf) not working

172 views Asked by fcz At 03 October 2023 at 19:18

score 143 · Answer 6 · 2023-05-29T22:56:53.307000

Merging two plink files

143 views Asked by Anna At 29 May 2023 at 22:56

score 507 · Answer 7 · 2023-01-28T12:29:08.520000

Is It Possible to Calculate Allele Frequency in a VCF File with Python?

507 views Asked by eh329 At 28 January 2023 at 12:29

score 122 · Answer 8 · 2022-11-19T08:42:00.723000

python error: Traceback (most recent call last), IndexError: list index out of range

122 views Asked by Ali Basuony At 19 November 2022 at 08:42

score 64 · Answer 9 · 2022-08-18T13:46:52.537000

How to configure vcftools in Ubuntu during installation?

64 views Asked by Yasmin Lima At 18 August 2022 at 13:46

score 419 · Answer 10 · 2022-05-01T21:20:28.853000

Missing data per site

419 views Asked by Anna At 01 May 2022 at 21:20

score 912 · Answer 11 · 2022-02-13T21:30:45.613000

Extract variant positions from VCF dependent on contents of other columns

912 views Asked by hdjc90 At 13 February 2022 at 21:30

score 2108 · Answer 12 · 2022-01-21T12:11:35.923000

How to run ensembl-vep in conda

2.1k views Asked by Mike At 21 January 2022 at 12:11

score 1258 · Answer 13 · 2021-12-17T17:14:05.290000

VCF file is missing mandatory header line ("#CHROM...")

1.2k views Asked by Shahedul Islam At 17 December 2021 at 17:14

score 583 · Answer 14 · 2021-11-16T14:10:08.747000

creating a per sample table from a vcf using bcftools

583 views Asked by tacrolimus At 16 November 2021 at 14:10

score 304 · Answer 15 · 2021-10-27T03:36:49.893000

Problems getting two output files in Nextflow

304 views Asked by fernanda-miron At 27 October 2021 at 03:36

score 126 · Answer 16 · 2021-10-17T07:29:55.737000

Merge three columns in one (linux, python, or perl)

126 views Asked by Alhu.A At 17 October 2021 at 07:29

score 162 · Answer 17 · 2021-07-12T09:34:40.350000

match 1,2,5 columns of file1 with 1,2,3 columns of file2 respectively and output should have matched rows from file 2. second file is zipped file .gz

score 128 · Answer 18 · 2021-03-11T16:13:19.233000

Genetic differentiation in R, function genetic_diff()

128 views Asked by A. Martins At 11 March 2021 at 16:13

score 669 · Answer 19 · 2021-02-06T23:36:26.483000

How to extract genotype information for each sample as a string from a VCF file using htslib?

669 views Asked by Alberto Casas Ortiz At 06 February 2021 at 23:36

score 905 · Answer 20 · 2021-01-25T08:31:33.207000

How can I filter by read depth using vcftools?

905 views Asked by Cora_olpe At 25 January 2021 at 08:31

TechQA.

List Question

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Filtering VCF files with bcftools

Separating alleles for 'bcftools merge' when ploidy >2

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

Extract summary statistic (beta, SE, EA, non-EA, EA frequency) from csv files (extracted from vcf) not working

Merging two plink files

Is It Possible to Calculate Allele Frequency in a VCF File with Python?

python error: Traceback (most recent call last), IndexError: list index out of range

How to configure vcftools in Ubuntu during installation?

Missing data per site

Extract variant positions from VCF dependent on contents of other columns

How to run ensembl-vep in conda

VCF file is missing mandatory header line ("#CHROM...")

creating a per sample table from a vcf using bcftools

Problems getting two output files in Nextflow

Merge three columns in one (linux, python, or perl)

match 1,2,5 columns of file1 with 1,2,3 columns of file2 respectively and output should have matched rows from file 2. second file is zipped file .gz

Genetic differentiation in R, function genetic_diff()

How to extract genotype information for each sample as a string from a VCF file using htslib?

How can I filter by read depth using vcftools?

Popular Questions

Trending Questions