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20 TechQA 2024-03-31T01:16:32.490000Problems with wilcard
46 views
Asked by George Odette
Why am i getting this warning: reason: Rules with neither input nor output files are always executed?
33 views
Asked by George Odette
Snakemake remote rules re-read config file?
52 views
Asked by Yotam Feldman
Having problems executing "include" in snakemake
40 views
Asked by George Odette
Snakemake issue: wildcard problems when trying to force a rule to be ran after another rule
37 views
Asked by Matthijs
How to apply python iloc on snakemake input file?
40 views
Asked by KKK
How to derive snakemake wildcards from python objects?
45 views
Asked by Zingo
Error in Snakefile while running the PyPSA-EUR first tutorial
54 views
Asked by user23715477
How does one get Mathematica `wolframscript` to behave (in parallel or otherwise) when run via `snakemake`?
20 views
Asked by Ed Bennett
Error in the Snakefile when running tutorial
59 views
Asked by Analyzer
Importing python modules from other packages with snakemake
16 views
Asked by RedWakaTuna
How to build a snakemake workflow with variable number of input files using checkpoints?
19 views
Asked by davie_891
Snakemake workflows work independently but fail when imported as a module
35 views
Asked by eggrep
Submitted Snakemake Rules Start to Run and Fail Immediately without throwing any Error but Snakemake Keeps Running
36 views
Asked by Erkin Alacamli
Snakemake taking the whole wildcard list as input
33 views
Asked by Petras Nasvytis
How to copy all files (rules, envs,..) called by a Snakefile into a new repository?
18 views
Asked by Luca Z
How to run a sample one by one in snakemake
41 views
Asked by kay
Snakemake: Handle paired reads in a directory
37 views
Asked by Anna
What's the advantage to specifying a log in the log section of a snakemake rule rather than specifying it in params?
32 views
Asked by user1537366
how to set output directory in shell in snakemake workflow
37 views
Asked by sahuno