TechQA.

Question

Samtools not working, but installing, because of libdeflate?

score 42 · Answer 1 · 2024-02-26T09:55:23.080000

0

Answer

42

Views

Samtools not working, but installing, because of libdeflate?

42 views Asked by faleevs At 26 February 2024 at 09:55

score 50 · Answer 2 · 2024-02-19T00:36:20.923000

samtools view -F option appears to not be functioning

50 views Asked by Matthew Urbano At 19 February 2024 at 00:36

score 27 · Answer 3 · 2024-01-30T07:25:19.747000

samtools and seqkit installation failed with conda (bioconda)

27 views Asked by CandyClass At 30 January 2024 at 07:25

score 165 · Answer 4 · 2023-12-14T20:32:52.783000

Issue Installing Bowtie2 and Samtools on Mac M2

165 views Asked by user22691576 At 14 December 2023 at 20:32

score 204 · Answer 5 · 2023-12-12T02:02:28.057000

Medaka: unrecognized command 'tools' and samtools not found

204 views Asked by Karli At 12 December 2023 at 02:02

score 152 · Answer 6 · 2023-11-28T01:51:51.990000

I made an error when using metawrap to binning

152 views Asked by xiaokalami At 28 November 2023 at 01:51

score 101 · Answer 7 · 2023-11-14T21:42:12.883000

Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped

101 views Asked by minhntran At 14 November 2023 at 21:42

score 35 · Answer 8 · 2023-09-26T22:00:23.927000

Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files

35 views Asked by tbiewerh At 26 September 2023 at 22:00

score 69 · Answer 9 · 2023-09-20T09:26:54.153000

issue with FreeBayes in the multibam version

69 views Asked by Gerardo Pepe At 20 September 2023 at 09:26

score 232 · Answer 10 · 2023-09-08T10:56:43.780000

Singularity could not open image

232 views Asked by sara777 At 08 September 2023 at 10:56

score 227 · Answer 11 · 2023-07-16T11:18:42.390000

How to run a command on multiple files within subdirectories with similar file suffix?

227 views Asked by user20330606 At 16 July 2023 at 11:18

score 217 · Answer 12 · 2023-07-14T13:42:55.613000

Samtools mpileup : error reading from input file

217 views Asked by Juliette G. At 14 July 2023 at 13:42

score 23 · Answer 13 · 2023-05-30T17:04:11.507000

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

23 views Asked by kolom At 30 May 2023 at 17:04

score 107 · Answer 14 · 2023-05-16T15:58:52.460000

Pysam view yield reads one at a time

107 views Asked by rbierman At 16 May 2023 at 15:58

score 92 · Answer 15 · 2023-04-27T14:37:47.387000

Regular Expression - how to capture a number of characters specified in the string

92 views Asked by CCranney At 27 April 2023 at 14:37

score 83 · Answer 16 · 2023-04-21T14:10:36.827000

Problem with viewing bam file downloaded from geo

83 views Asked by Mahgen At 21 April 2023 at 14:10

score 136 · Answer 17 · 2023-04-17T10:45:17.653000

How do I resolve the "inconsistent chromosome block error?

136 views Asked by Rafail Adam At 17 April 2023 at 10:45

score 27 · Answer 18 · 2023-04-14T13:48:27.067000

pileup "]" meaning in read-bases column

27 views Asked by rbierman At 14 April 2023 at 13:48

score 224 · Answer 19 · 2023-03-21T19:23:49.377000

Snakemake: MissingInputException in rule - Missing input files for rule sam_to_bam:

224 views Asked by Theresa At 21 March 2023 at 19:23

score 127 · Answer 20 · 2023-02-16T10:26:02.887000

Split a SAM file in Awk keeping N number of lines as header

127 views Asked by Somu At 16 February 2023 at 10:26

TechQA.

List Question

Samtools not working, but installing, because of libdeflate?

samtools view -F option appears to not be functioning

samtools and seqkit installation failed with conda (bioconda)

Issue Installing Bowtie2 and Samtools on Mac M2

Medaka: unrecognized command 'tools' and samtools not found

I made an error when using metawrap to binning

Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped

Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files

issue with FreeBayes in the multibam version

Singularity could not open image

How to run a command on multiple files within subdirectories with similar file suffix?

Samtools mpileup : error reading from input file

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

Pysam view yield reads one at a time

Regular Expression - how to capture a number of characters specified in the string

Problem with viewing bam file downloaded from geo

How do I resolve the "inconsistent chromosome block error?

pileup "]" meaning in read-bases column

Snakemake: MissingInputException in rule - Missing input files for rule sam_to_bam:

Split a SAM file in Awk keeping N number of lines as header

Popular Questions

Trending Questions