TechQA.

Question

how to install pysam in vscode? "error with subprocess.py"

score 64 · Answer 1 · 2023-12-29T09:34:43.293000

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how to install pysam in vscode? "error with subprocess.py"

64 views Asked by Masoud Hassanpour At 29 December 2023 at 09:34

score 114 · Answer 2 · 2023-12-22T18:10:43.090000

How do i get and use AlignmentHeader from pysam?

114 views Asked by Greg Dougherty At 22 December 2023 at 18:10

score 249 · Answer 3 · 2023-12-13T18:52:04.787000

How do I fix the error when installing the pysam package?

249 views Asked by todua10 At 13 December 2023 at 18:52

score 19 · Answer 4 · 2023-10-12T13:03:47.273000

Where can I get the time series mentioned in the exampkle "working-with-csp.ipynb"?

19 views Asked by PSteinhahn At 12 October 2023 at 13:03

score 38 · Answer 5 · 2023-07-10T06:58:18.913000

Converting nested tuple 0 into row in matrix

38 views Asked by Arthur Martineau At 10 July 2023 at 06:58

score 31 · Answer 6 · 2023-06-13T08:41:40.923000

Error in installing of pysam (error to build HSTlib) during of CNVkit installation

31 views Asked by gholamreza rafiei At 13 June 2023 at 08:41

score 51 · Answer 7 · 2023-05-23T07:20:42.190000

PySAM import failure on python3.11 macbookPro M2

51 views Asked by Taslimi At 23 May 2023 at 07:20

score 107 · Answer 8 · 2023-05-16T15:58:52.460000

Pysam view yield reads one at a time

107 views Asked by rbierman At 16 May 2023 at 15:58

score 155 · Answer 9 · 2023-04-14T14:40:56.967000

MapDamage [E::fai_retrieve] Failed to retrieve block: unexpected end of file, in snakemake pipeline

155 views Asked by angelina.Z.H At 14 April 2023 at 14:40

score 686 · Answer 10 · 2022-11-26T15:38:56.767000

sum elements in python list if match condition

686 views Asked by fonpe At 26 November 2022 at 15:38

score 195 · Answer 11 · 2022-11-21T16:03:23.357000

Docker installation testing fails because of missing dependency which was installed earlier

195 views Asked by azural At 21 November 2022 at 16:03

score 103 · Answer 12 · 2022-10-28T09:23:17.640000

Wrong plotting data (insert size vs base quality means from BAM file)

103 views Asked by P. Solar At 28 October 2022 at 09:23

score 442 · Answer 13 · 2022-06-03T15:23:39.803000

Cannot install pysam

442 views Asked by Yvette Moreno At 03 June 2022 at 15:23

score 151 · Answer 14 · 2021-09-17T18:28:59.023000

Bam file processing function code with parseargs in Python and Ubuntu

151 views Asked by Laura At 17 September 2021 at 18:28

score 1043 · Answer 15 · 2021-06-05T11:39:14.977000

How to use pysam.view() to convert SAM to BAM

1k views Asked by twinsinc At 05 June 2021 at 11:39

score 1133 · Answer 16 · 2021-03-29T23:56:13.117000

Snakemake Conda environment does not seem to be activating though it says it is

1.1k views Asked by ekofman At 29 March 2021 at 23:56

score 679 · Answer 17 · 2020-07-18T11:28:18.720000

How to add "OQ" tag with read quality score as additional field in the bam file using pysam

679 views Asked by user3214212 At 18 July 2020 at 11:28

score 389 · Answer 18 · 2020-06-17T10:01:46.730000

Deeptools cannot find file that exists

389 views Asked by Whitehot At 17 June 2020 at 10:01

score 1141 · Answer 19 · 2020-03-31T17:13:06.727000

extract lines from bam file

1.1k views Asked by Amaranta_Remedios At 31 March 2020 at 17:13

score 1198 · Answer 20 · 2020-03-15T09:51:40.203000

Command errored out with exit status 1: Python setup.py [...] When trying to install Pysam

1.1k views Asked by NIVE At 15 March 2020 at 09:51

TechQA.

List Question

how to install pysam in vscode? "error with subprocess.py"

How do i get and use AlignmentHeader from pysam?

How do I fix the error when installing the pysam package?

Where can I get the time series mentioned in the exampkle "working-with-csp.ipynb"?

Converting nested tuple 0 into row in matrix

Error in installing of pysam (error to build HSTlib) during of CNVkit installation

PySAM import failure on python3.11 macbookPro M2

Pysam view yield reads one at a time

MapDamage [E::fai_retrieve] Failed to retrieve block: unexpected end of file, in snakemake pipeline

sum elements in python list if match condition

Docker installation testing fails because of missing dependency which was installed earlier

Wrong plotting data (insert size vs base quality means from BAM file)

Cannot install pysam

Bam file processing function code with parseargs in Python and Ubuntu

How to use pysam.view() to convert SAM to BAM

Snakemake Conda environment does not seem to be activating though it says it is

How to add "OQ" tag with read quality score as additional field in the bam file using pysam

Deeptools cannot find file that exists

extract lines from bam file

Command errored out with exit status 1: Python setup.py [...] When trying to install Pysam

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