TechQA.

Question

base recalibrator --known-sites argument does not work

score 329 · Answer 1 · 2023-10-16 23:34:35

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329

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base recalibrator --known-sites argument does not work

329 views Asked by user22752471 At 16 October 2023 at 23:34

score 337 · Answer 2 · 2023-10-19 21:18:54

Parsing FORMAT and sample value fields from VCF file

337 views Asked by milcs40 At 19 October 2023 at 21:18

score 96 · Answer 3 · 2023-11-07 08:50:05

Troubleshooting GATK Pipeline Error in AWS ParallelCluster Environment and Spark

96 views Asked by BioRaulazo At 07 November 2023 at 08:50

score 106 · Answer 4 · 2022-12-23 18:51:37

How do I use this python function within the params section of my Snakemake rule?

106 views Asked by Ari Miller At 23 December 2022 at 18:51

score 241 · Answer 5 · 2021-09-16 13:35:47

snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem

241 views Asked by Shafayet Rahat At 16 September 2021 at 13:35

score 157 · Answer 6 · 2021-09-30 13:24:59

What does 'NEGATIVE_TRAIN_SITE' in VQSR mean?

157 views Asked by JEJI At 30 September 2021 at 13:24

score 79 · Answer 7 · 2023-08-04 10:31:26

GATK Variant Filtration file Anopheles gambiae s.s

79 views Asked by smossy At 04 August 2023 at 10:31

score 120 · Answer 8 · 2023-08-03 16:03:02

New: Fatal error compiling: java.lang.NoClassDefFoundError: com/sun/tools/javac/main/OptionName: com.sun.tools.javac.main.OptionName

120 views Asked by Greg Dougherty At 03 August 2023 at 16:03

score 1135 · Answer 9 · 2021-12-10 20:36:48

gatk VariantRecalibrator positional argument error

1.1k views Asked by Mike At 10 December 2021 at 20:36

score 1491 · Answer 10 · 2021-12-13 23:14:12

Combine a directory of GVCF files with gatk CombineGVCFs

1.4k views Asked by Mike At 13 December 2021 at 23:14

TechQA.

List Question

base recalibrator --known-sites argument does not work

Parsing FORMAT and sample value fields from VCF file

Troubleshooting GATK Pipeline Error in AWS ParallelCluster Environment and Spark

How do I use this python function within the params section of my Snakemake rule?

snakemake multiple parameters for multiple input and single output in snakemake. ConbineGVCFs gatk problem

What does 'NEGATIVE_TRAIN_SITE' in VQSR mean?

GATK Variant Filtration file Anopheles gambiae s.s

New: Fatal error compiling: java.lang.NoClassDefFoundError: com/sun/tools/javac/main/OptionName: com.sun.tools.javac.main.OptionName

gatk VariantRecalibrator positional argument error

Combine a directory of GVCF files with gatk CombineGVCFs

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