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Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped

score 101 · Answer 1 · 2023-11-14T21:42:12.883000

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Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped

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TechQA.

List Question

Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped

strand-specific alignment with BWA

How do I run burrows-wheeler aligner on windows subsystem for linux?

Burrows wheeler transform

Trying to store Reverse string pattern into key value pair not working (Burrows Wheeler Rotation)

How do I optimize Heap sort being used in sorting Class objects for Burrows Wheeler Transform?

Burrows-Wheeler Transform (BWT) repeating string

multiple variables in bash loop for bwa sampe

Why is bzip2's maximum blocksize 900k?

Text Compression and Decompression using BWT

What is wrong with my logic in Burrows-Wheeler reverse transformation?

Fast implementation of BWT in Lua

Reverse BWT without knowing last character

Using suffix array algorithm for Burrows Wheeler transform

Idiomatic string rotation in Clojure

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Analyzing a string before Burrows-Wheeler transform?

Burrows-Wheeler Transform (BWT) - Stored Data

Which algorithm is most suitable for Burrows-Wheeler Transform?

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