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Getting Orthologs from biomart by using python

score 25 · Answer 1 · 2024-02-09T17:31:29.550000

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Getting Orthologs from biomart by using python

25 views Asked by ammad aslam At 09 February 2024 at 17:31

score 116 · Answer 2 · 2023-11-27T20:47:15.947000

Issue with getBM() from Biomart

116 views Asked by Yonina Loskove At 27 November 2023 at 20:47

score 566 · Answer 3 · 2023-11-06T18:16:08.270000

Problem using dbplyr with biomaRt annotation

566 views Asked by Roberto Salatino At 06 November 2023 at 18:16

score 13309 · Answer 4 · 2023-10-26T22:45:04.297000

Error: ! Failed to collect lazy table. Caused by error in `db_collect()` - using biomaRt package in R

13.3k views Asked by Chrystin L. At 26 October 2023 at 22:45

score 44 · Answer 5 · 2023-07-18T16:39:59.060000

I would like to retrieve proteins sequences from many protein IDs

44 views Asked by code_newbie At 18 July 2023 at 16:39

score 46 · Answer 6 · 2023-06-09T19:50:18.417000

Convert Ensemble ID in gene symbol

46 views Asked by Pietro Scaduto At 09 June 2023 at 19:50

score 162 · Answer 7 · 2023-04-17T14:29:45.427000

Converting UniProt IDs to NCBI gene ID is incomplete using biomaRt

162 views Asked by DrBrush At 17 April 2023 at 14:29

score 354 · Answer 8 · 2023-04-11T13:49:58.043000

biomaRt - NameSpace loading failed

354 views Asked by Alessia At 11 April 2023 at 13:49

score 92 · Answer 9 · 2023-03-19T19:41:53.293000

R one-to-many mappings

92 views Asked by Anon At 19 March 2023 at 19:41

score 84 · Answer 10 · 2023-03-16T09:41:02.513000

error using biomaRt: Error in `mutate()` and `dplyr::select()`

84 views Asked by Chiara At 16 March 2023 at 09:41

score 147 · Answer 11 · 2022-07-26T15:28:51.347000

How to I convert genes/features of species A to orthologous genes for species B for cross species single cell RNA sequencing dataset integration

score 298 · Answer 12 · 2022-07-24T19:50:09.877000

Alternative Biomart Hosts

298 views Asked by Rob Staruch At 24 July 2022 at 19:50

score 455 · Answer 13 · 2022-04-10T12:41:26.087000

Error in EnsDb.Hsapiens.v86 package to convert ensembl to symbol

455 views Asked by Hicham Hboub At 10 April 2022 at 12:41

score 521 · Answer 14 · 2022-04-08T19:11:40.810000

How do I use biomaRT to get the corresponding gene iDs

521 views Asked by ksci At 08 April 2022 at 19:11

score 456 · Answer 15 · 2022-04-07T18:49:27.613000

Is it possible to annotate ALL myIDs from Ensembl to symbol using R (biomaRt)?

456 views Asked by Hicham Hboub At 07 April 2022 at 18:49

score 584 · Answer 16 · 2022-04-07T17:46:39.087000

How to install biomaRt from bioconductor

584 views Asked by ksci At 07 April 2022 at 17:46

score 54 · Answer 17 · 2022-01-05T10:49:44.953000

Why do I have a different amount of estimated gene counts?

54 views Asked by pythonbeginner At 05 January 2022 at 10:49

score 284 · Answer 18 · 2021-12-22T15:09:21.633000

Can't convert dog ensembl IDs into gene names

284 views Asked by Yulia Kentieva At 22 December 2021 at 15:09

score 696 · Answer 19 · 2021-05-30T08:19:10.867000

biomaRt getBM not working due to getNodeSet {XML} error

696 views Asked by wkde At 30 May 2021 at 08:19

score 2250 · Answer 20 · 2021-04-27T08:25:59.730000

Error with R package biomaRt and This dependency RSQLite

2.2k views Asked by William Jarassier At 27 April 2021 at 08:25

TechQA.

List Question

Getting Orthologs from biomart by using python

Issue with getBM() from Biomart

Problem using dbplyr with biomaRt annotation

Error: ! Failed to collect lazy table. Caused by error in `db_collect()` - using biomaRt package in R

I would like to retrieve proteins sequences from many protein IDs

Convert Ensemble ID in gene symbol

Converting UniProt IDs to NCBI gene ID is incomplete using biomaRt

biomaRt - NameSpace loading failed

R one-to-many mappings

error using biomaRt: Error in `mutate()` and `dplyr::select()`

How to I convert genes/features of species A to orthologous genes for species B for cross species single cell RNA sequencing dataset integration

Alternative Biomart Hosts

Error in EnsDb.Hsapiens.v86 package to convert ensembl to symbol

How do I use biomaRT to get the corresponding gene iDs

Is it possible to annotate ALL myIDs from Ensembl to symbol using R (biomaRt)?

How to install biomaRt from bioconductor

Why do I have a different amount of estimated gene counts?

Can't convert dog ensembl IDs into gene names

biomaRt getBM not working due to getNodeSet {XML} error

Error with R package biomaRt and This dependency RSQLite

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