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Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

score 54 · Answer 1 · 2024-03-10T05:48:57.540000

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Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

54 views Asked by Prachi At 10 March 2024 at 05:48

score 48 · Answer 2 · 2024-03-08T14:46:45.760000

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

48 views Asked by user23561149 At 08 March 2024 at 14:46

score 17 · Answer 3 · 2024-03-07T11:51:10.610000

Filtering VCF files with bcftools

17 views Asked by eleni.ps At 07 March 2024 at 11:51

score 22 · Answer 4 · 2024-03-07T04:29:10.233000

Separating alleles for 'bcftools merge' when ploidy >2

22 views Asked by Isaac At 07 March 2024 at 04:29

score 14 · Answer 5 · 2024-02-25T03:33:17.053000

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

14 views Asked by CoderQ At 25 February 2024 at 03:33

score 124 · Answer 6 · 2024-01-15T13:17:51.680000

Error message with medaka pyabpoa and libgsl.so.25

124 views Asked by CorentinEscobar At 15 January 2024 at 13:17

score 168 · Answer 7 · 2023-12-21T19:44:03.173000

BCFtools merge command collapsing non-identical variants to single record

168 views Asked by Logan Wallace At 21 December 2023 at 19:44

score 215 · Answer 8 · 2023-12-13T13:27:24.890000

How can I retrieve all variants only for a specific gene from VCF file using BCFTools?

215 views Asked by Joshua Jebaraj At 13 December 2023 at 13:27

score 95 · Answer 9 · 2023-11-09T16:19:56.063000

Merging VCF Files and Expanding Metadata Efficiently

95 views Asked by binf-er At 09 November 2023 at 16:19

score 35 · Answer 10 · 2023-09-26T22:00:23.927000

Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files

35 views Asked by tbiewerh At 26 September 2023 at 22:00

score 21 · Answer 11 · 2023-09-21T17:35:27.990000

BCFtools fails to read regions inside nested while loop / for loop

21 views Asked by Gabriel G. At 21 September 2023 at 17:35

score 59 · Answer 12 · 2023-09-18T15:17:51.073000

How do I loop through bam files with different species designations and different sample sizes, and then pass them to the same command? - Bash

59 views Asked by tbiewerh At 18 September 2023 at 15:17

score 171 · Answer 13 · 2023-09-08T21:31:16.130000

Segmentation fault: 11 during bcftools merge

171 views Asked by ABG At 08 September 2023 at 21:31

score 68 · Answer 14 · 2023-07-28T21:32:58.210000

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

68 views Asked by pooch At 28 July 2023 at 21:32

score 23 · Answer 15 · 2023-05-30T17:04:11.507000

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

23 views Asked by kolom At 30 May 2023 at 17:04

score 274 · Answer 16 · 2023-05-05T18:29:15.367000

how to modify individual codes in a vcf file

274 views Asked by Khaleesi95 At 05 May 2023 at 18:29

score 92 · Answer 17 · 2023-01-16T16:35:24.253000

Globbing a filename and then saving to a variable

92 views Asked by Liam At 16 January 2023 at 16:35

score 152 · Answer 18 · 2022-11-18T21:11:20.473000

Bcftools 1.16 able to add F_MISSING tag?

152 views Asked by ra23mik At 18 November 2022 at 21:11

score 927 · Answer 19 · 2022-09-05T15:03:35.963000

Better splitting of mutliallelic sites then bcftools norm --m-any

927 views Asked by gernophil At 05 September 2022 at 15:03

score 776 · Answer 20 · 2022-07-25T12:15:31.253000

bcftools mpileup failed, format error of index

776 views Asked by Mauro At 25 July 2022 at 12:15

TechQA.

List Question

Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Filtering VCF files with bcftools

Separating alleles for 'bcftools merge' when ploidy >2

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

Error message with medaka pyabpoa and libgsl.so.25

BCFtools merge command collapsing non-identical variants to single record

How can I retrieve all variants only for a specific gene from VCF file using BCFTools?

Merging VCF Files and Expanding Metadata Efficiently

Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files

BCFtools fails to read regions inside nested while loop / for loop

How do I loop through bam files with different species designations and different sample sizes, and then pass them to the same command? - Bash

Segmentation fault: 11 during bcftools merge

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

how to modify individual codes in a vcf file

Globbing a filename and then saving to a variable

Bcftools 1.16 able to add F_MISSING tag?

Better splitting of mutliallelic sites then bcftools norm --m-any

bcftools mpileup failed, format error of index

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