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filter bam after alignment

score 77 · Answer 1 · 2024-01-10T11:44:54.170000

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filter bam after alignment

77 views Asked by jonny jeep At 10 January 2024 at 11:44

score 38 · Answer 2 · 2024-01-06T20:28:02.123000

problem with feature counts of RNA bulk seq paired data- in Rsubread

38 views Asked by MKE1508 At 06 January 2024 at 20:28

score 114 · Answer 3 · 2023-12-22T18:10:43.090000

How do i get and use AlignmentHeader from pysam?

114 views Asked by Greg Dougherty At 22 December 2023 at 18:10

score 291 · Answer 4 · 2023-11-16T16:20:26.077000

Extract Reads by region from a BAM file

291 views Asked by ayesha At 16 November 2023 at 16:20

score 69 · Answer 5 · 2023-09-20T09:26:54.153000

issue with FreeBayes in the multibam version

69 views Asked by Gerardo Pepe At 20 September 2023 at 09:26

score 83 · Answer 6 · 2023-06-24T20:54:15.687000

Statistically comparing two surfaces (gams)

83 views Asked by Josué García Arch At 24 June 2023 at 20:54

score 40 · Answer 7 · 2023-05-12T11:39:20.353000

bam-readcount: command not found

40 views Asked by age_gs At 12 May 2023 at 11:39

score 83 · Answer 8 · 2023-04-21T14:10:36.827000

Problem with viewing bam file downloaded from geo

83 views Asked by Mahgen At 21 April 2023 at 14:10

score 19 · Answer 9 · 2023-04-18T15:58:08.923000

BaseRecalibration by GATK

19 views Asked by Anna At 18 April 2023 at 15:58

score 59 · Answer 10 · 2023-04-07T16:32:25.597000

Error using BWA to map environmental transcriptome against a genomic reference

59 views Asked by Clayton Tracey At 07 April 2023 at 16:32

score 127 · Answer 11 · 2023-02-16T10:26:02.887000

Split a SAM file in Awk keeping N number of lines as header

127 views Asked by Somu At 16 February 2023 at 10:26

score 223 · Answer 12 · 2023-01-03T14:20:14.477000

MissingOutputException snakemake

223 views Asked by Ralph matar At 03 January 2023 at 14:20

score 230 · Answer 13 · 2022-12-06T07:42:39.733000

pilon error, file .bam must be indexed BAM

230 views Asked by Giffredo At 06 December 2022 at 07:42

score 143 · Answer 14 · 2022-12-05T15:55:56.363000

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

143 views Asked by Cassie Bishop At 05 December 2022 at 15:55

score 686 · Answer 15 · 2022-11-26T15:38:56.767000

sum elements in python list if match condition

686 views Asked by fonpe At 26 November 2022 at 15:38

score 284 · Answer 16 · 2022-08-04T08:51:14.893000

Sort vec of structs by custom (natural?) order of String field and numeric field

284 views Asked by Wouter De Coster At 04 August 2022 at 08:51

score 52 · Answer 17 · 2022-06-28T08:37:05.007000

What is the best way to use expand() with one unknown variable in Snakemake?

52 views Asked by James At 28 June 2022 at 08:37

score 187 · Answer 18 · 2022-06-14T08:01:59.947000

Find sequencing reads with insertions longer than number

187 views Asked by PaulaO At 14 June 2022 at 08:01

score 2070 · Answer 19 · 2022-05-31T08:16:15.397000

Bash: Extract reads from BAM files based on read length

2k views Asked by XSmitt At 31 May 2022 at 08:16

score 577 · Answer 20 · 2022-05-07T09:06:56.873000

convert CRAM file to SAM file

577 views Asked by Guy Ab At 07 May 2022 at 09:06

TechQA.

List Question

filter bam after alignment

problem with feature counts of RNA bulk seq paired data- in Rsubread

How do i get and use AlignmentHeader from pysam?

Extract Reads by region from a BAM file

issue with FreeBayes in the multibam version

Statistically comparing two surfaces (gams)

bam-readcount: command not found

Problem with viewing bam file downloaded from geo

BaseRecalibration by GATK

Error using BWA to map environmental transcriptome against a genomic reference

Split a SAM file in Awk keeping N number of lines as header

MissingOutputException snakemake

pilon error, file .bam must be indexed BAM

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

sum elements in python list if match condition

Sort vec of structs by custom (natural?) order of String field and numeric field

What is the best way to use expand() with one unknown variable in Snakemake?

Find sequencing reads with insertions longer than number

Bash: Extract reads from BAM files based on read length

convert CRAM file to SAM file

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